The Hoying Laboratory, researching cardiovascular therapeutics and regenerative medicine.
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  CARMA >> Computational Analysis of Replicate Measures for Arrays  
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For a more detailed description of CARMA and an example of its use please read the manuscript entitled "CARMA: A platform for analyzing microarray datasets that incorporate replicate measures" (BMC Bioinformatics in review).

To download the compiled R package for windows
click here.

To download the R source file for CARMA click here.

For a more detailed instructions on how to use CARMA please download the CARMA user manual.

For an example analysis using files generated using a GenePix scanner (.gpr files) please download and unzip the file here. Please note that this example dataset is very small and violates some of the assumptions of CARMA. It is intended for demonstration purposes only, and some of the steps (for example normalization) produce suboptimal results.

For an example analysis using files generated using a ArrayWoRx scanner (.csv files) please download and unzip the file here. Please note that this example dataset is very small and violates some of the assumptions of CARMA. It is intended for demonstration purposes only, and some of the steps (for example normalization) produce suboptimal results.

To download the dataset and example analysis in the manuscript please click here [Warning: this is a large file (~36 MB)].

Below is an example of the graphical output for one gene.

 


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Hoying Lab >> CARMA
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Cardiovascular Innovation Institute